IL_3O58_109

3D structure

PDB id

3O58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome. This entry consists of the 60S subunit of the first 80S in the asymmetric unit.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

3O58|1|1|A|2281, 3O58|1|1|C|2285, 3O58|1|1|U|2286, 3O58|1|1|C|2287, 3O58|1|1|C|2306

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43333.1

Basepair signature

Not available

Number of instances in this motif group

2

Unit IDs

3O58|1|1|C|2277
3O58|1|1|C|2278
3O58|1|1|A|2279
3O58|1|1|A|2280
3O58|1|1|A|2281
3O58|1|1|U|2282
3O58|1|1|G|2283
3O58|1|1|C|2284
3O58|1|1|C|2285
3O58|1|1|U|2286
3O58|1|1|C|2287
3O58|1|1|G|2288
*
3O58|1|1|C|2304
3O58|1|1|G|2305
3O58|1|1|C|2306
3O58|1|1|G|2307

Current chains

Chain 1

25S ribosomal RNA

Nearby chains