Motif IL_43333.1 Version IL_43333.1 of this group appears in releases 0.5 to 0.5

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8		9		10	break		11		12		13	1-13	6-7	10-11
1	IL_2QBG_077	2QBG	0.0000	3	B	23S rRNA	C	1934	G	1935	A	1936	A	1937	U	1939	U	1940	C	1941	C	1942	U	1943	G	1945	*	C	1961	C	1962	G	1964	cWW		cWW
2	IL_3O58_109	3O58	0.4683	3	1	25S ribosomal RNA	C	2277	C	2278	A	2279	A	2280	U	2282	G	2283	C	2284	C	2285	U	2286	G	2288	*	C	2304	G	2305	G	2307	cWW	cSH	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAAAUUCCUUG*CCUG	1
CCAAAUGCCUCG*CGCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAAAUUCCUU*CU	1
CAAAUGCCUC*GC	1

Release history

Release	0.5
Date	2011-12-08
Status	New id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

Child motif	Common motif instances	Only in IL_43333.1	Only in the child motif
IL_89028.1 Compare	IL_2QBG_077	IL_3O58_109	IL_4A1B_092, IL_1S72_071

Annotations: (2)
Basepair signature
Heat map statistics: Min 0.47 | Avg 0.23 | Max 0.47

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