IL_3OTO_016

3D structure

PDB id

3OTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3OTO_016 not in the Motif Atlas

Geometric match to IL_4LFB_015

Geometric discrepancy: 0.1064

The information below is about IL_4LFB_015

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

3OTO|1|A|G|371
3OTO|1|A|C|372
3OTO|1|A|A|373
3OTO|1|A|A|374
3OTO|1|A|U|375
*
3OTO|1|A|A|389
3OTO|1|A|C|390

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16