IL_3OTO_020

3D structure

PDB id

3OTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3OTO_020 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.135

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

3OTO|1|A|G|450
3OTO|1|A|A|451
3OTO|1|A|A|452
3OTO|1|A|A|453
3OTO|1|A|C|454
3OTO|1|A|C|455
*
3OTO|1|A|G|477
3OTO|1|A|A|478
3OTO|1|A|C|479
3OTO|1|A|U|480
3OTO|1|A|G|481
3OTO|1|A|A|482
3OTO|1|A|C|483

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16