IL_3OTO_034

3D structure

PDB id

3OTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3OTO_034 not in the Motif Atlas

Homologous match to IL_4LFB_032

Geometric discrepancy: 0.0881

The information below is about IL_4LFB_032

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

3OTO|1|A|G|774
3OTO|1|A|G|775
3OTO|1|A|G|776
3OTO|1|A|A|777
3OTO|1|A|G|778
*
3OTO|1|A|U|804
3OTO|1|A|C|805

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

30S RIBOSOMAL PROTEIN S11