IL_3OTO_037

3D structure

PDB id

3OTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

UGA*UACA

Length

7 nucleotides

Bulged bases

3OTO|1|A|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3OTO_037 not in the Motif Atlas

Geometric match to IL_4KYY_002

Geometric discrepancy: 0.2844

The information below is about IL_4KYY_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

3OTO|1|A|U|921
3OTO|1|A|G|922
3OTO|1|A|A|923
*
3OTO|1|A|U|1393
3OTO|1|A|A|1394
3OTO|1|A|C|1395
3OTO|1|A|A|1396

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

30S RIBOSOMAL PROTEIN S5