IL_3OTO_050
3D structure
- PDB id
- 3OTO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.69 Å
Loop
- Sequence
- CAC*GUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: CAC,GUG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3OTO_050 not in the Motif Atlas
- Geometric match to IL_4V9F_105
- Geometric discrepancy: 0.1557
- The information below is about IL_4V9F_105
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
3OTO|1|A|C|1244
3OTO|1|A|A|1245
3OTO|1|A|C|1246
*
3OTO|1|A|G|1291
3OTO|1|A|U|1292
3OTO|1|A|G|1293
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- 30S RIBOSOMAL PROTEIN S7
- Chain I
- 30S RIBOSOMAL PROTEIN S9
- Chain M
- 30S RIBOSOMAL PROTEIN S13
- Chain U
- 30S RIBOSOMAL PROTEIN THX
Coloring options: