IL_3OTO_053

3D structure

PDB id

3OTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

3OTO|1|A|U|1257, 3OTO|1|A|U|1278, 3OTO|1|A|A|1280, 3OTO|1|A|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3OTO_053 not in the Motif Atlas

Geometric match to IL_4LFB_052

Geometric discrepancy: 0.2695

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

3OTO|1|A|G|1255
3OTO|1|A|A|1256
3OTO|1|A|U|1257
3OTO|1|A|G|1258
*
3OTO|1|A|C|1277
3OTO|1|A|U|1278
3OTO|1|A|A|1279
3OTO|1|A|A|1280
3OTO|1|A|U|1281
3OTO|1|A|C|1282

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

30S RIBOSOMAL PROTEIN S3

Chain J

30S RIBOSOMAL PROTEIN S10

Chain N

30S RIBOSOMAL PROTEIN S14