IL_3OTO_059

3D structure

PDB id

3OTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

CGUC*GUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3OTO_059 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2644

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

3OTO|1|A|C|1404
3OTO|1|A|G|1405
3OTO|1|A|U|1406
3OTO|1|A|C|1407
*
3OTO|1|A|G|1494
3OTO|1|A|U|1495
3OTO|1|A|C|1496
3OTO|1|A|G|1497

Current chains

Chain A

16S rRNA

Nearby chains