IL_3OTO_063

3D structure

PDB id

3OTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

UGGGAG*UGACUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3OTO_063 not in the Motif Atlas

Geometric match to IL_4N0T_001

Geometric discrepancy: 0.3996

The information below is about IL_4N0T_001

Detailed Annotation

Double sheared; A in syn; two near cWW pairs

Broad Annotation

Double sheared; A in syn; two near cWW pairs

Motif group

IL_71294.3

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

3OTO|1|A|U|1414
3OTO|1|A|G|1415
3OTO|1|A|G|1416
3OTO|1|A|G|1417
3OTO|1|A|A|1418
3OTO|1|A|G|1419
*
3OTO|1|A|U|1481
3OTO|1|A|G|1482
3OTO|1|A|A|1483
3OTO|1|A|C|1484
3OTO|1|A|U|1485
3OTO|1|A|G|1486

Current chains

Chain A

16S rRNA

Nearby chains