Motif IL_82292.2 Version IL_82292.2 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4EYA_005 | 4EYA | 0.3976 | 0 | Tandem non-canonical cWW pairs with near WC pairs | h+g | RNA (12-mer) | C | 5 | C | 6 | U | 7 | U | 8 | G | 9 | G | 10 | * | C | 5 | C | 6 | U | 7 | U | 8 | G | 9 | G | 10 | cWW | ncWW | ncwW | ncWW | ncWS | |
| 2 | IL_8SSW_003 | 8SSW | 0.0000 | 0 | C+D | RNA (28-MER) | C | 11 | G | 12 | C | 13 | A | 14 | A | 15 | G | 16 | * | C | 11 | G | 12 | C | 13 | A | 14 | A | 15 | G | 16 | cWW | cWH | ncWWa | ncWW | cWH | cWW | |
| 3 | IL_4N0T_001 | 4N0T | 0.5829 | 0 | Double sheared; A in syn; two near cWW pairs | B | U6 snRNA | A | 95 | G | 96 | A | 97 | G | 98 | A | 99 | C | 100 | * | G | 31 | U | 32 | C | 33 | A | 34 | A | 35 | U | 36 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUUGG*CCUUGG | 1 |
| CGCAAG*CGCAAG | 1 |
| AGAGAC*GUCAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUUG*CUUG | 1 |
| GCAA*GCAA | 1 |
| GAGA*UCAA | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Tandem non-canonical cWW pairs with near WC pairs (1)
- Double sheared; A in syn; two near cWW pairs (1)
- (1)
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Heat map statistics
- Min 0.40 | Avg 0.38 | Max 0.71
Coloring options: