IL_3OW2_020

3D structure

PDB id

3OW2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGACCG*CCAGUAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3OW2_020 not in the Motif Atlas

Geometric match to IL_4V9F_019

Geometric discrepancy: 0.0642

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

3OW2|1|0|U|567
3OW2|1|0|G|568
3OW2|1|0|A|569
3OW2|1|0|C|570
3OW2|1|0|C|571
3OW2|1|0|G|572
*
3OW2|1|0|C|585
3OW2|1|0|C|586
3OW2|1|0|A|587
3OW2|1|0|G|588
3OW2|1|0|U|589
3OW2|1|0|A|590
3OW2|1|0|A|591

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain V

50S ribosomal protein L30P