IL_3OW2_032

3D structure

PDB id

3OW2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCGAGG*CCGUUUGACG

Length

16 nucleotides

Bulged bases

3OW2|1|0|U|1029, 3OW2|1|0|U|1030

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3OW2_032 not in the Motif Atlas

Geometric match to IL_6HCT_001

Geometric discrepancy: 0.3949

The information below is about IL_6HCT_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_74205.1

Basepair signature

cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

Number of instances in this motif group

3

Unit IDs

3OW2|1|0|C|936
3OW2|1|0|C|937
3OW2|1|0|G|938
3OW2|1|0|A|939
3OW2|1|0|G|940
3OW2|1|0|G|941
*
3OW2|1|0|C|1025
3OW2|1|0|C|1026
3OW2|1|0|G|1027
3OW2|1|0|U|1028
3OW2|1|0|U|1029
3OW2|1|0|U|1030
3OW2|1|0|G|1031
3OW2|1|0|A|1032
3OW2|1|0|C|1033
3OW2|1|0|G|1034

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain N

50S ribosomal protein L18e

Chain P

50S ribosomal protein L21e

Chain V

50S ribosomal protein L30P