IL_3OW2_039

3D structure

PDB id

3OW2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UCCCCAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3OW2_039 not in the Motif Atlas

Geometric match to IL_4V9F_038

Geometric discrepancy: 0.062

The information below is about IL_4V9F_038

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

3OW2|1|0|U|1101
3OW2|1|0|C|1102
3OW2|1|0|C|1103
3OW2|1|0|C|1104
3OW2|1|0|C|1105
3OW2|1|0|A|1106
3OW2|1|0|A|1107
3OW2|1|0|G|1108
*
3OW2|1|0|C|1254
3OW2|1|0|A|1255

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain I

50S ribosomal protein L13P

Chain V

50S ribosomal protein L30P