IL_3OW2_050

3D structure

PDB id

3OW2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

AUAGUAG*UGAACU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3OW2_050 not in the Motif Atlas

Homologous match to IL_4V9F_049

Geometric discrepancy: 0.0321

The information below is about IL_4V9F_049

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

3OW2|1|0|A|1367
3OW2|1|0|U|1368
3OW2|1|0|A|1369
3OW2|1|0|G|1370
3OW2|1|0|U|1371
3OW2|1|0|A|1372
3OW2|1|0|G|1373
*
3OW2|1|0|U|2052
3OW2|1|0|G|2053
3OW2|1|0|A|2054
3OW2|1|0|A|2055
3OW2|1|0|C|2056
3OW2|1|0|U|2057

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain Q

50S ribosomal protein L22P