IL_3OXB_003

3D structure

PDB id

3OXB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of glycine riboswitch with single mutation

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGAAG*CAG

Length

8 nucleotides

Bulged bases

3OXB|1|A|A|33

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3OXB_003 not in the Motif Atlas

Geometric match to IL_3OXE_002

Geometric discrepancy: 0.1426

The information below is about IL_3OXE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65498.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

3OXB|1|A|C|31
3OXB|1|A|G|32
3OXB|1|A|A|33
3OXB|1|A|A|34
3OXB|1|A|G|35
*
3OXB|1|A|C|70
3OXB|1|A|A|71
3OXB|1|A|G|72

Current chains

Chain A

Domain II of glycine riboswitch

Nearby chains

Chain B

Domain II of glycine riboswitch