3OXB Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3OXB_001 | 1/A/17:24 | Anticodon loop related | geometric HL_3OXE_001 HL_46665.1 | |
| HL_3OXB_002 | 1/A/49:54 | GNRA related | geometric HL_3OXE_002 HL_37569.1 | |
| HL_3OXB_004 | 1/B/49:54 | No text annotation | geometric HL_8VTW_051 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3OXB_003 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3OXB_002 | 1/A/12:14, 1/A/27:28 | Single bulged A | geometric IL_3OXE_001 IL_14190.1 | |
| IL_3OXB_003 | 1/A/31:35, 1/A/70:72 | No text annotation | geometric IL_3OXE_002 IL_65498.1 | |
| IL_3OXB_004 | 1/A/35:36, 1/A/68:70 | Major groove platform | geometric IL_3OXE_003 IL_48076.7 | |
| IL_3OXB_005 | 1/A/38:42, 1/A/61:66 | UAA/GAN with extra stack | geometric IL_3OXE_004 IL_82787.1 | |
| IL_3OXB_007 | 1/B/12:14, 1/B/27:28 | Single bulged A | geometric IL_3OXE_001 IL_14190.1 | |
| IL_3OXB_008 | 1/B/31:35, 1/B/70:72 | No text annotation | geometric IL_3OXE_002 IL_65498.1 | |
| IL_3OXB_009 | 1/B/35:36, 1/B/68:70 | Major groove platform | geometric IL_3OXE_003 IL_48076.7 | |
| IL_3OXB_010 | 1/B/38:42, 1/B/61:66 | UAA/GAN with extra stack | geometric IL_3OXE_004 IL_82787.1 | |
| IL_3OXB_011 | 1/B/45:47, 1/B/56:58 | Isolated cWH basepair | geometric IL_4KQ0_004 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3OXB_001 | Isolated non-canonical cWW pair | ||
| IL_3OXB_006 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3OXB_001 | 1/A/7:12, 1/A/28:29, 1/A/74:82 | No text annotation | geometric J3_3OXE_001 J3_58957.1 | |
| J3_3OXB_002 | 1/B/7:12, 1/B/28:29, 1/B/74:82 | No text annotation | geometric J3_3OXE_001 J3_58957.1 |
Problematic loops
No problematic loops
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