IL_3P59_005

3D structure

PDB id

3P59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

First Crystal Structure of a RNA Nanosquare

Experimental method

X-RAY DIFFRACTION

Resolution

2.18 Å

Loop

Sequence

GAACC*GC

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3P59_005 not in the Motif Atlas

Geometric match to IL_6DVK_003

Geometric discrepancy: 0.3893

The information below is about IL_6DVK_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88017.1

Basepair signature

cWW-L-cWW-L-L-R-L

Number of instances in this motif group

7

Unit IDs

3P59|1|G|G|52
3P59|1|G|A|53
3P59|1|G|A|54
3P59|1|G|C|55
3P59|1|G|C|58
*
3P59|1|H|G|110
3P59|1|H|C|111

Current chains

Chain G

RNA (5'-R(*CP*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*(5BU)P*G)-3')

Chain H

RNA (5'-R(*CP*CP*GP*GP*CP*AP*GP*CP*CP*U)-3')

Nearby chains

Chain A

RNA (5'-R(*CP*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*(5BU)P*G)-3')