IL_3P59_006

3D structure

PDB id

3P59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

First Crystal Structure of a RNA Nanosquare

Experimental method

X-RAY DIFFRACTION

Resolution

2.18 Å

Loop

Sequence

C(5BU)G*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3P59_006 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.1468

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

3P59|1|G|C|58
3P59|1|G|5BU|59
3P59|1|G|G|60
*
3P59|1|H|C|108
3P59|1|H|A|109
3P59|1|H|G|110

Current chains

Chain G

RNA (5'-R(*CP*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*(5BU)P*G)-3')

Chain H

RNA (5'-R(*CP*CP*GP*GP*CP*AP*GP*CP*CP*U)-3')

Nearby chains

Chain A

RNA (5'-R(*CP*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*(5BU)P*G)-3')

Chain E

RNA (5'-R(*CP*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*(5BU)P*G)-3')