IL_3PIO_049

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UAC*GAG

Length

6 nucleotides

Bulged bases

3PIO|1|X|A|1233

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIO_049 not in the Motif Atlas

Homologous match to IL_7A0S_044

Geometric discrepancy: 0.1421

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

3PIO|1|X|U|1232
3PIO|1|X|A|1233
3PIO|1|X|C|1234
*
3PIO|1|X|G|1241
3PIO|1|X|A|1242
3PIO|1|X|G|1243

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain O

50S ribosomal protein L21