IL_3PIO_091

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UGAA*UUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIO_091 not in the Motif Atlas

Homologous match to IL_4WF9_085

Geometric discrepancy: 0.5641

The information below is about IL_4WF9_085

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

3PIO|1|X|U|2185
3PIO|1|X|G|2186
3PIO|1|X|A|2187
3PIO|1|X|A|2188
*
3PIO|1|X|U|2197
3PIO|1|X|U|2198
3PIO|1|X|C|2199
3PIO|1|X|G|2200

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain A

50S ribosomal protein L2