IL_3PIO_114

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGCG*CGGAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIO_114 not in the Motif Atlas

Homologous match to IL_7RQB_109

Geometric discrepancy: 0.2293

The information below is about IL_7RQB_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58764.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

3PIO|1|X|G|2818
3PIO|1|X|G|2819
3PIO|1|X|C|2820
3PIO|1|X|G|2821
*
3PIO|1|X|C|2845
3PIO|1|X|G|2846
3PIO|1|X|G|2847
3PIO|1|X|A|2848
3PIO|1|X|C|2849

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain K

50S ribosomal protein L17

Chain M

50S ribosomal protein L19