IL_3PIO_128

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUGUCGUCGCAUAGACAGCC*GGUCGAGUGACGAUGC

Length

36 nucleotides

Bulged bases

3PIO|1|X|U|1056, 3PIO|1|X|A|1057

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIO|1|X|G|1045
3PIO|1|X|U|1046
3PIO|1|X|G|1047
3PIO|1|X|U|1048
3PIO|1|X|C|1049
3PIO|1|X|G|1050
3PIO|1|X|U|1051
3PIO|1|X|C|1052
3PIO|1|X|G|1053
3PIO|1|X|C|1054
3PIO|1|X|A|1055
3PIO|1|X|U|1056
3PIO|1|X|A|1057
3PIO|1|X|G|1058
3PIO|1|X|A|1059
3PIO|1|X|C|1060
3PIO|1|X|A|1061
3PIO|1|X|G|1062
3PIO|1|X|C|1063
3PIO|1|X|C|1064
*
3PIO|1|X|G|1117
3PIO|1|X|G|1118
3PIO|1|X|U|1119
3PIO|1|X|C|1120
3PIO|1|X|G|1121
3PIO|1|X|A|1122
3PIO|1|X|G|1123
3PIO|1|X|U|1124
3PIO|1|X|G|1125
3PIO|1|X|A|1126
3PIO|1|X|C|1127
3PIO|1|X|G|1128
3PIO|1|X|A|1129
3PIO|1|X|U|1130
3PIO|1|X|G|1131
3PIO|1|X|C|1132

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain E

50S ribosomal protein L6

Chain J

50S ribosomal protein L16

Chain S

50S ribosomal protein L25