IL_3PIO_135

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CAAGG*CUCAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIO_135 not in the Motif Atlas

Homologous match to IL_7A0S_056

Geometric discrepancy: 0.2058

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

3PIO|1|X|C|1491
3PIO|1|X|A|1492
3PIO|1|X|A|1493
3PIO|1|X|G|1494
3PIO|1|X|G|1495
*
3PIO|1|X|C|1529
3PIO|1|X|U|1530
3PIO|1|X|C|1531
3PIO|1|X|A|1532
3PIO|1|X|G|1533

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains