IL_3PIO_139

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGAAAUUCCUUGU*ACCUG

Length

18 nucleotides

Bulged bases

3PIO|1|X|A|1921, 3PIO|1|X|U|1927, 3PIO|1|X|U|1946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIO|1|X|C|1917
3PIO|1|X|G|1918
3PIO|1|X|A|1919
3PIO|1|X|A|1920
3PIO|1|X|A|1921
3PIO|1|X|U|1922
3PIO|1|X|U|1923
3PIO|1|X|C|1924
3PIO|1|X|C|1925
3PIO|1|X|U|1926
3PIO|1|X|U|1927
3PIO|1|X|G|1928
3PIO|1|X|U|1929
*
3PIO|1|X|A|1943
3PIO|1|X|C|1944
3PIO|1|X|C|1945
3PIO|1|X|U|1946
3PIO|1|X|G|1947

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains