IL_3PIO_144

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AUUGAG*CAAGAUGAGU

Length

16 nucleotides

Bulged bases

3PIO|1|X|G|2760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIO|1|X|A|2614
3PIO|1|X|U|2615
3PIO|1|X|U|2616
3PIO|1|X|G|2617
3PIO|1|X|A|2618
3PIO|1|X|G|2619
*
3PIO|1|X|C|2754
3PIO|1|X|A|2755
3PIO|1|X|A|2756
3PIO|1|X|G|2757
3PIO|1|X|A|2758
3PIO|1|X|U|2759
3PIO|1|X|G|2760
3PIO|1|X|A|2761
3PIO|1|X|G|2762
3PIO|1|X|U|2763

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain M

50S ribosomal protein L19