IL_3PIP_009

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GUUAGUAG*CGAACCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_009 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.1495

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

3PIP|1|X|G|215
3PIP|1|X|U|216
3PIP|1|X|U|217
3PIP|1|X|A|218
3PIP|1|X|G|219
3PIP|1|X|U|220
3PIP|1|X|A|221
3PIP|1|X|G|222
*
3PIP|1|X|C|230
3PIP|1|X|G|231
3PIP|1|X|A|232
3PIP|1|X|A|233
3PIP|1|X|C|234
3PIP|1|X|C|235
3PIP|1|X|C|236

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain I

50S ribosomal protein L15