IL_3PIP_010

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GUC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUC,GAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_010 not in the Motif Atlas

Geometric match to IL_3LA5_001

Geometric discrepancy: 0.1931

The information below is about IL_3LA5_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

3PIP|1|X|G|389
3PIP|1|X|U|390
3PIP|1|X|C|391
*
3PIP|1|X|G|409
3PIP|1|X|A|410
3PIP|1|X|C|411

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain U

50S ribosomal protein L28