IL_3PIP_016
3D structure
- PDB id
- 3PIP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 3PIP|1|X|G|814, 3PIP|1|X|G|818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3PIP_016 not in the Motif Atlas
- Homologous match to IL_4WF9_021
- Geometric discrepancy: 0.1873
- The information below is about IL_4WF9_021
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
3PIP|1|X|G|687
3PIP|1|X|A|688
3PIP|1|X|A|689
3PIP|1|X|A|690
3PIP|1|X|C|691
*
3PIP|1|X|G|812
3PIP|1|X|A|813
3PIP|1|X|G|814
3PIP|1|X|A|815
3PIP|1|X|U|816
3PIP|1|X|A|817
3PIP|1|X|G|818
3PIP|1|X|C|819
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain I
- 50S ribosomal protein L15
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