Motif IL_73855.2 Version IL_73855.2 of this group appears in releases 4.7 to 4.7
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 4-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_024 | 4V9F | 0.2336 | 2 | tHW-tHW cross-strand stack | 0 | LSU rRNA | G | 892 | C | 893 | A | 895 | C | 896 | A | 897 | C | 899 | * | G | 765 | A | 766 | A | 767 | U | 768 | C | 769 | cWW | tWH | tWH | cWW | |
| 2 | IL_8OI5_030 | 8OI5 | 0.0531 | 2 | 1 | LSU rRNA | C | 927 | U | 928 | G | 930 | U | 931 | A | 932 | C | 934 | * | G | 801 | A | 802 | A | 803 | A | 804 | G | 805 | cWW | ntHH | tWH | cWW | ||
| 3 | IL_9H3G_034 | 9H3G | 0.0446 | 2 | A | LSU rRNA | C | 940 | U | 941 | G | 943 | U | 944 | A2M | 945 | C | 947 | * | OMG | 814 | A | 815 | A2M | 816 | A | 817 | G | 818 | cWW | ntHH | tWH | cWW | ||
| 4 | IL_9AXU_026 | 9AXU | 0.0000 | 2 | 2 | LSU rRNA | C | 963 | U | 964 | G | 966 | U | 967 | A | 968 | C | 970 | * | G | 837 | A | 838 | A | 839 | A | 840 | G | 841 | cWW | ntHH | tWH | cWW | ||
| 5 | IL_8GLP_290 | 8GLP | 0.0383 | 2 | L5 | LSU rRNA | C | 1648 | U | 1649 | G | 1651 | U | 1652 | A | 1653 | C | 1655 | * | OMG | 1522 | A | 1523 | A2M | 1524 | A | 1525 | G | 1526 | cWW | ntHH | tWH | cWW | ||
| 6 | IL_8P9A_256 | 8P9A | 0.0491 | 2 | tHW-tHW cross-strand stack (H) | AR | LSU rRNA | C | 931 | U | 932 | G | 934 | U | 935 | A | 936 | C | 938 | * | G | 805 | A | 806 | A | 807 | A | 808 | G | 809 | cWW | ntHH | tWH | cWW | |
| 7 | IL_9E6Q_026 | 9E6Q | 0.1369 | 2 | tHW-tHW cross-strand stack (H) | 1 | LSU rRNA | G | 917 | U | 918 | A | 920 | U | 921 | A | 922 | C | 924 | * | G | 791 | A | 792 | A | 793 | A | 794 | C | 795 | cWW | tWH | tWH | cWW | |
| 8 | IL_8B0X_080 | 8B0X | 0.1677 | 2 | a | LSU rRNA | G | 801 | A | 802 | A | 804 | U | 805 | A | 806 | C | 808 | * | G | 676 | A | 677 | A | 678 | A | 679 | C | 680 | cWW | tWW | tWH | tWH | cWW | |
| 9 | IL_9DFE_016 | 9DFE | 0.1831 | 2 | 1A | LSU rRNA | G | 799 | A | 800 | A | 802 | U | 803 | A | 804 | C | 806 | * | G | 674 | A | 675 | A | 676 | A | 677 | C | 678 | cWW | tWW | tWH | tWH | cWW | |
| 10 | IL_7A0S_015 | 7A0S | 0.1717 | 2 | tHW-tHW cross-strand stack | X | LSU rRNA | G | 812 | A | 813 | A | 815 | U | 816 | A | 817 | C | 819 | * | G | 687 | A | 688 | A | 689 | A | 690 | C | 691 | cWW | ntWW | tWH | cWW | |
| 11 | IL_4WF9_021 | 4WF9 | 0.1527 | 2 | tHW-tHW cross-strand stack | X | LSU rRNA | G | 844 | A | 845 | A | 847 | U | 848 | A | 849 | C | 851 | * | G | 719 | A | 720 | A | 721 | A | 722 | C | 723 | cWW | ntWW | ntWW | tWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGAUAGC*GAAAC | 4 |
| CUAGUAGC*GAAAG | 3 |
| GCAACAGC*GAAUC | 1 |
| CUAGU(A2M)GC*(OMG)A(A2M)AG | 1 |
| CUAGUAGC*(OMG)A(A2M)AG | 1 |
| GUGAUAGC*GAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGAUAG*AAA | 4 |
| UAGUAG*AAA | 3 |
| CAACAG*AAU | 1 |
| UAGU(A2M)G*A(A2M)A | 1 |
| UAGUAG*A(A2M)A | 1 |
| UGAUAG*AAA | 1 |
Release history
| Release | 4.7 |
|---|---|
| Date | 2026-02-25 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- tHW-tHW cross-strand stack (3)
- tHW-tHW cross-strand stack (H) (2)
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Heat map statistics
- Min 0.04 | Avg 0.14 | Max 0.30
Coloring options: