IL_3PIP_024

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UGUUG*UUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_024 not in the Motif Atlas

Geometric match to IL_4WF9_029

Geometric discrepancy: 0.3392

The information below is about IL_4WF9_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

3PIP|1|X|U|857
3PIP|1|X|G|858
3PIP|1|X|U|859
3PIP|1|X|U|860
3PIP|1|X|G|861
*
3PIP|1|X|U|942
3PIP|1|X|U|943
3PIP|1|X|A|944
3PIP|1|X|G|945

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain W

50S ribosomal protein L30