IL_3PIP_035

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CUCAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

3PIP|1|X|C|1152

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_035 not in the Motif Atlas

Homologous match to IL_7A0S_036

Geometric discrepancy: 0.2702

The information below is about IL_7A0S_036

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

3PIP|1|X|C|1029
3PIP|1|X|U|1030
3PIP|1|X|C|1031
3PIP|1|X|A|1032
3PIP|1|X|G|1033
3PIP|1|X|U|1034
3PIP|1|X|G|1035
*
3PIP|1|X|C|1150
3PIP|1|X|U|1151
3PIP|1|X|C|1152
3PIP|1|X|A|1153
3PIP|1|X|A|1154
3PIP|1|X|G|1155

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13