IL_3PIP_044

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

3PIP|1|X|G|1261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_044 not in the Motif Atlas

Geometric match to IL_4WF9_044

Geometric discrepancy: 0.1516

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

3PIP|1|X|C|1210
3PIP|1|X|G|1211
3PIP|1|X|U|1212
*
3PIP|1|X|A|1260
3PIP|1|X|G|1261
3PIP|1|X|U|1262
3PIP|1|X|G|1263

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15

Chain N

50S ribosomal protein L20