IL_3PIP_049

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_049 not in the Motif Atlas

Homologous match to IL_7A0S_045

Geometric discrepancy: 0.111

The information below is about IL_7A0S_045

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

3PIP|1|X|A|1275
3PIP|1|X|U|1276
3PIP|1|X|G|1277
3PIP|1|X|A|1278
3PIP|1|X|G|1279
3PIP|1|X|U|1280
3PIP|1|X|A|1281
3PIP|1|X|A|1282
*
3PIP|1|X|U|1994
3PIP|1|X|G|1995
3PIP|1|X|A|1996
3PIP|1|X|A|1997
3PIP|1|X|A|1998
3PIP|1|X|U|1999
3PIP|1|X|U|2000

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32