IL_3PIP_061

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CUAU*AAACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_061 not in the Motif Atlas

Homologous match to IL_7A0S_053

Geometric discrepancy: 0.1966

The information below is about IL_7A0S_053

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

3PIP|1|X|C|1451
3PIP|1|X|U|1452
3PIP|1|X|A|1453
3PIP|1|X|U|1454
*
3PIP|1|X|A|1567
3PIP|1|X|A|1568
3PIP|1|X|A|1569
3PIP|1|X|C|1570
3PIP|1|X|G|1571

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains