IL_3PIP_078

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GUGGAGC*GCGAAAU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_078 not in the Motif Atlas

Geometric match to IL_4V9F_001

Geometric discrepancy: 0.3879

The information below is about IL_4V9F_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_22311.2

Basepair signature

cWW-cWW-tSH-tHS-tHS-L-R-cWW

Number of instances in this motif group

11

Unit IDs

3PIP|1|X|G|1847
3PIP|1|X|U|1848
3PIP|1|X|G|1849
3PIP|1|X|G|1850
3PIP|1|X|A|1851
3PIP|1|X|G|1852
3PIP|1|X|C|1853
*
3PIP|1|X|G|1864
3PIP|1|X|C|1865
3PIP|1|X|G|1866
3PIP|1|X|A|1867
3PIP|1|X|A|1868
3PIP|1|X|A|1869
3PIP|1|X|U|1870

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain U

50S ribosomal protein L28