IL_3PIP_093

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GAC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAC,GUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_093 not in the Motif Atlas

Geometric match to IL_3LA5_001

Geometric discrepancy: 0.2046

The information below is about IL_3LA5_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

3PIP|1|X|G|2279
3PIP|1|X|A|2280
3PIP|1|X|C|2281
*
3PIP|1|X|G|2293
3PIP|1|X|U|2294
3PIP|1|X|C|2295

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain D

50S ribosomal protein L5

Chain Y

5S ribosomal RNA; 5S rRNA