IL_3PIP_095

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGUAC*GGCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_095 not in the Motif Atlas

Geometric match to IL_1J2B_001

Geometric discrepancy: 0.3871

The information below is about IL_1J2B_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69301.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

3PIP|1|X|G|2378
3PIP|1|X|G|2379
3PIP|1|X|U|2380
3PIP|1|X|A|2381
3PIP|1|X|C|2382
*
3PIP|1|X|G|2393
3PIP|1|X|G|2394
3PIP|1|X|C|2395
3PIP|1|X|C|2396

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35

Chain I

50S ribosomal protein L15