Motif IL_69301.1 Version IL_69301.1 of this group appears in releases 4.1 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-5 | 3-7 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8OI5_009 | 8OI5 | 0.5669 | 0 | 1 | LSU rRNA | G | 161 | U | 162 | A | 163 | U | 164 | C | 165 | * | G | 256 | U | 257 | U | 258 | C | 259 | cWW | cwW | ncWw | cWW | ||
| 2 | IL_1J2B_001 | 1J2B | 0.4240 | 0 | C | tRNA | G | 943 | G | 944 | A | 945 | G | 946 | G | 947 | * | C | 926 | G | 927 | C | 928 | C | 929 | cWW | cWW | ||||
| 3 | IL_8OI5_103 | 8OI5 | 0.0000 | 0 | 1 | LSU rRNA | G | 2835 | A | 2836 | U | 2837 | U | 2838 | C | 2839 | * | G | 2795 | G | 2796 | C | 2797 | U | 2798 | cWW | cWWa | ncSH | ncWW | cWW | |
| 4 | IL_4PHY_006 | 4PHY | 0.6750 | 2 | A+B | RNA (26-MER) + RNA (20-mer) | G | 17 | A | 18 | U | 19 | C | 20 | C | 22 | * | G | 30 | G | 31 | A | 33 | C | 34 | cWW | cWw | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAUC*GUUC | 1 |
| GGAGG*CGCC | 1 |
| GAUUC*GGCU | 1 |
| GAUCAC*GGAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAU*UU | 1 |
| GAG*GC | 1 |
| AUU*GC | 1 |
| AUCA*GAA | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Heat map statistics
- Min 0.42 | Avg 0.45 | Max 0.71
Coloring options: