IL_3PIP_128

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UCCCUAAAUG*CUA

Length

13 nucleotides

Bulged bases

3PIP|1|X|U|1023

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_128 not in the Motif Atlas

Geometric match to IL_4M4O_001

Geometric discrepancy: 0.2492

The information below is about IL_4M4O_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

3PIP|1|X|U|1015
3PIP|1|X|C|1016
3PIP|1|X|C|1017
3PIP|1|X|C|1018
3PIP|1|X|U|1019
3PIP|1|X|A|1020
3PIP|1|X|A|1021
3PIP|1|X|A|1022
3PIP|1|X|U|1023
3PIP|1|X|G|1024
*
3PIP|1|X|C|1160
3PIP|1|X|U|1161
3PIP|1|X|A|1162

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain G

50S ribosomal protein L13

Chain N

50S ribosomal protein L20