IL_3PIP_147

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

AACG*CAGUU

Length

9 nucleotides

Bulged bases

3PIP|1|X|A|2581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_147 not in the Motif Atlas

Homologous match to IL_5J7L_343

Geometric discrepancy: 0.5507

The information below is about IL_5J7L_343

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIP|1|X|A|2568
3PIP|1|X|A|2569
3PIP|1|X|C|2570
3PIP|1|X|G|2571
*
3PIP|1|X|C|2580
3PIP|1|X|A|2581
3PIP|1|X|G|2582
3PIP|1|X|U|2583
3PIP|1|X|U|2584

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain A

50S ribosomal protein L2