IL_5J7L_343

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAC*G(PSU)(PSU)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J7L_343 not in the Motif Atlas

Geometric match to IL_6AZ4_001

Geometric discrepancy: 0.3452

The information below is about IL_6AZ4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69145.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

5J7L|1|DA|G|2588
5J7L|1|DA|A|2589
5J7L|1|DA|A|2590
5J7L|1|DA|C|2591
*
5J7L|1|DA|G|2603
5J7L|1|DA|PSU|2604
5J7L|1|DA|PSU|2605
5J7L|1|DA|C|2606

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2