IL_3PIP_168

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CC*GUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_168 not in the Motif Atlas

Homologous match to IL_8OI5_136

Geometric discrepancy: 0.5774

The information below is about IL_8OI5_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87975.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

3PIP|1|Y|C|32
3PIP|1|Y|C|33
*
3PIP|1|Y|G|53
3PIP|1|Y|U|54
3PIP|1|Y|C|55
3PIP|1|Y|G|56

Current chains

Chain Y

5S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L5

Chain L

50S ribosomal protein L18