Motif IL_87975.1 Version IL_87975.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-2 | 1-3 | 1-6 | 3-6 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8P9A_366 | 8P9A | 0.4645 | 0 | Minor groove platform (H) | AS | 5S rRNA | G | 49 | U | 50 | A | 51 | G | 52 | * | C | 28 | C | 29 | cWW | cWS | cWW | ||
| 2 | IL_8OI5_136 | 8OI5 | 0.4395 | 0 | 3 | 5S rRNA | G | 49 | U | 50 | A | 51 | G | 52 | * | C | 28 | C | 29 | cWW | cWS | cWW | |||
| 3 | IL_8B0X_007 | 8B0X | 0.3037 | 0 | Minor groove platform (H) | A | SSU rRNA | U | 70 | A | 71 | A | 72 | C | 73 | * | G | 97 | A | 98 | ncSH | cWW | ncWS | cWW | |
| 4 | IL_8B0X_051 | 8B0X | 0.1778 | 0 | Minor groove platform (H) | A | SSU rRNA | C | 1129 | A | 1130 | G | 1131 | C | 1132 | * | G | 1142 | G | 1143 | cSH | cWW | cWW | ||
| 5 | IL_3MXH_005 | 3MXH | 0.0000 | 0 | Minor groove platform | R | c-di-GMP riboswitch | A | 61 | A | 62 | A | 63 | C | 64 | * | G | 76 | U | 77 | ncSH | cWW | cWW | ||
| 6 | IL_3IWN_005 | 3IWN | 0.1466 | 0 | Minor groove platform | A | C-di-GMP riboswitch | A | 51 | A | 52 | A | 53 | C | 54 | * | G | 71 | U | 72 | ncSH | cWW | ncWS | cWW | |
| 7 | IL_9E6Q_071 | 9E6Q | 0.2547 | 0 | 1 | LSU rRNA | G | 1982 | U | 1983 | A | 1984 | C | 1985 | * | G | 2014 | C | 2015 | ncSH | cWW | cWW | |||
| 8 | IL_4LFB_049 | 4LFB | 0.2661 | 1 | Minor groove platform | A | SSU rRNA | C | 1128 | A | 1130 | G | 1131 | C | 1132 | * | G | 1142 | G | 1143 | cWW | ncWS | ncWW | ||
| 9 | IL_3RW6_001 | 3RW6 | 0.4167 | 0 | Minor groove platform | H | constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA | U | 53 | A | 54 | A | 55 | U | 56 | * | A | 7 | A | 8 | ncSH | cWW | cWW | ||
| 10 | IL_8GLP_028 | 8GLP | 0.5811 | 1 | L5 | LSU rRNA | C | 665 | A | 667 | C | 668 | C | 669 | * | G | 487 | G | 488 | ntSW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAG*CC | 2 |
| AAAC*GU | 2 |
| UAAC*GA | 1 |
| CAGC*GG | 1 |
| GUAC*GC | 1 |
| CCAGC*GG | 1 |
| UAAU*AA | 1 |
| CGACC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA* | 4 |
| UA* | 3 |
| AG* | 1 |
| CAG* | 1 |
| GAC* | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Minor groove platform (4)
- Minor groove platform (H) (3)
- (3)
- Basepair signature
- cWW-L-cWW-L
- Heat map statistics
- Min 0.09 | Avg 0.38 | Max 0.70
Coloring options: