IL_3PYO_040

3D structure

PDB id

3PYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome. This file contains the 50S subunit of the first 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

3PYO|1|A|A|1046

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18488.1

Basepair signature

Not available

Number of instances in this motif group

2

Unit IDs

3PYO|1|A|C|1043
3PYO|1|A|G|1044
3PYO|1|A|A|1045
3PYO|1|A|A|1046
3PYO|1|A|G|1047
3PYO|1|A|A|1048
3PYO|1|A|C|1049
3PYO|1|A|A|1050
3PYO|1|A|G|1051
*
3PYO|1|A|U|1108
3PYO|1|A|C|1109
3PYO|1|A|G|1110
3PYO|1|A|A|1111
3PYO|1|A|G|1112

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain I

50S ribosomal protein L10