Motif IL_18488.1 Version IL_18488.1 of this group appears in releases 0.5 to 0.5

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8	break		9		10		11		12		13	1-5	1-13	2-12	4-12	5-11	5-13	7-10	8-9
1	IL_2QBG_042	2QBG	0.0000	1	B	LSU rRNA	C	1043	C	1044	C	1045	G	1047	A	1048	C	1049	A	1050	G	1051	*	U	1108	C	1109	G	1110	A	1111	G	1112	csS	cWW	ntsS	tSH		tSs		cWW
2	IL_3PYO_040	3PYO	0.2399	1	A	LSU rRNA	C	1043	G	1044	A	1045	G	1047	A	1048	C	1049	A	1050	G	1051	*	U	1108	C	1109	G	1110	A	1111	G	1112	csS	cWW		ntSH	ntHS		ncWW	ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CCCAGACAG*UCGAG	1
CGAAGACAG*UCGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
CCAGACA*CGA	1
GAAGACA*CGA	1

Release history

Release	0.5
Date	2011-12-08
Status	New id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

Child motif	Common motif instances	Only in IL_18488.1	Only in the child motif
IL_34363.1 Compare	IL_2QBG_042	IL_3PYO_040	IL_3U5H_059, IL_1S72_043

Annotations: (2)
Basepair signature
Heat map statistics: Min 0.24 | Avg 0.12 | Max 0.24

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