IL_3Q1R_004

3D structure

PDB id

3Q1R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a bacterial RNase P holoenzyme in complex with TRNA and in the presence of 5' leader

Experimental method

X-RAY DIFFRACTION

Resolution

4.21 Å

Loop

Sequence

GG*CAAC

Length

6 nucleotides

Bulged bases

3Q1R|1|B|A|206, 3Q1R|1|B|A|207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3Q1R_004 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.1576

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

3Q1R|1|B|G|108
3Q1R|1|B|G|109
*
3Q1R|1|B|C|205
3Q1R|1|B|A|206
3Q1R|1|B|A|207
3Q1R|1|B|C|208

Current chains

Chain B

RNase P RNA

Nearby chains

Chain C

Transfer RNA; tRNA