IL_3Q3Z_003

3D structure

PDB id

3Q3Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a c-di-GMP-II riboswitch from C. acetobutylicum bound to c-di-GMP

Experimental method

X-RAY DIFFRACTION

Resolution

2.51 Å

Loop

Sequence

GAAA*UUAGUAGUGCAACCGAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23414.1

Basepair signature

cWW-L-R-R-R-cSH-R-bif-tWH-R-R-R-R-R-L-cWW

Number of instances in this motif group

2

Unit IDs

3Q3Z|1|A|G|12
3Q3Z|1|A|A|13
3Q3Z|1|A|A|14
3Q3Z|1|A|A|15
*
3Q3Z|1|A|U|59
3Q3Z|1|A|U|60
3Q3Z|1|A|A|61
3Q3Z|1|A|G|62
3Q3Z|1|A|U|63
3Q3Z|1|A|A|64
3Q3Z|1|A|G|65
3Q3Z|1|A|U|66
3Q3Z|1|A|G|67
3Q3Z|1|A|C|68
3Q3Z|1|A|A|69
3Q3Z|1|A|A|70
3Q3Z|1|A|C|71
3Q3Z|1|A|C|72
3Q3Z|1|A|G|73
3Q3Z|1|A|A|74
3Q3Z|1|A|C|75

Current chains

Chain A

c-di-GMP-II riboswitch

Nearby chains

Chain V

Cyclic di-GMP-II riboswitch