Motif IL_23414.1 Version IL_23414.1 of this group appears in releases 0.6 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 1-21 | 2-20 | 3-6 | 4-5 | 8-13 | 16-17 | 16-18 | |||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3Q3Z_001 | 3Q3Z | 0.0000 | 0 | V | Cyclic di-GMP-II riboswitch | G | 12 | A | 13 | A | 14 | A | 15 | * | U | 59 | U | 60 | A | 61 | G | 62 | U | 63 | A | 64 | G | 65 | U | 66 | G | 67 | C | 68 | A | 69 | A | 70 | C | 71 | C | 72 | G | 73 | A | 74 | C | 75 | cWW | cwW | ncWW | cWW | tWH | cSH | ncSH | |
| 2 | IL_3Q3Z_003 | 3Q3Z | 0.1638 | 0 | A | Cyclic di-GMP-II riboswitch | G | 12 | A | 13 | A | 14 | A | 15 | * | U | 59 | U | 60 | A | 61 | G | 62 | U | 63 | A | 64 | G | 65 | U | 66 | G | 67 | C | 68 | A | 69 | A | 70 | C | 71 | C | 72 | G | 73 | A | 74 | C | 75 | cWW | ntWW | cWW | tWH | cSH | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAA*UUAGUAGUGCAACCGAC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*UAGUAGUGCAACCGA | 2 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.17 | 1.18 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 | 2014-09-04 | 2014-10-07 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-L-R-R-R-cSH-R-bif-tWH-R-R-R-R-R-L-cWW
- Heat map statistics
- Min 0.16 | Avg 0.08 | Max 0.16
Coloring options: