IL_3QSY_002

3D structure

PDB id

3QSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the methionylated initiator tRNA by the translation initiation factor 2 in Archaea

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3QSY_002 not in the Motif Atlas

Geometric match to IL_6F4H_001

Geometric discrepancy: 0.2247

The information below is about IL_6F4H_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

3QSY|1|D|G|49
3QSY|1|D|U|50
3QSY|1|D|C|51
*
3QSY|1|D|G|63
3QSY|1|D|G|64
3QSY|1|D|C|65

Current chains

Chain D

tRNA

Nearby chains

Chain A

Translation initiation factor 2 subunit gamma

Chain B

Translation initiation factor 2 subunit alpha